Assessing Eutrophication: Compute Annual Indicators

Compute the Annual Indicators (i.e. the calculated HEAT EQRS per indicator per year per assessment unit), as part the eutrophication assessment using HELCOM's HEAT assessment tool. As input, please provide a file containing combined and filtered station samples (CTD, bottle and pump/ferrybox combined in one file). Besides your custom station samples, you may define your own custom configuration files to set your own indicator thresholds etc. In addition, please specify how Chlorophyll-A should be handled. This tool extends the third part of the original HEAT assessment computation script.

HELCOM HEAT

Inputs
Id Title Data Type Description
station_samples Station samples (filtered, combined) object Merged sample data of BOT, PMP and CTD data for indicator calculation (StationSamples.csv).
combined_Chlorophylla_IsWeighted Chlorophyll A Weighted? boolean If true, the script calculates combined chlorophyll A indicator results per assessment unit as a weighted average from BOT, PMP and EO. If false, then simple average.
table_indicators Table of Indicators string A table listing the indicators. Needs the following column names: IndicatorID; CriteriaID; Name; Code; Parameters; Units; YearMin; YearMax; MonthMin; MonthMax; DepthMin; DepthMax; Metric; Response; Applied; Comments; GTC_HM; GTC_ML; STC_HM; STC_ML; SSC_HM; SSC_ML (please ask HELCOM for details). Please provide a URL to the table as a CSV file.
table_indicator_units Table of Indicator Units string A table listing something about the indicators. Needs the following column names: IndicatorID; UnitID; ET; ACDEV; EQR_HG; EQR_GM; EQR_MP; EQR_PB; IW. Please ask HELCOM for details. Please provide a URL to the table as a CSV file.
table_indicator_unit_results string A table listing something about the indicators. Needs the following column names: IndicatorID; UnitID; Period; ES; SD; N; NM; EQR; EQRS; GTC; STC; SSC. Please ask HELCOM for details. Please provide a URL to the table as a CSV file.
spatial_units units_cleaned.shp object Non-Gridded spatial units, as a shapefile, used for this process. Please provide a URL to the layer as a zipped shapefile.
Outputs
Id Title Description
annual_indicators Annual Indicators Table CSV file of calculated HEAT EQRS per indicator per year per assessment unit (AnnualIndicators.csv).

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